Department Publications

2025

10. PANDA-PLUS: Improved dataset of prostate whole slide images from PANDA Challenge with pixel-level expert annotations

    Spencer Hopson^‡, Carson Mildon^‡, Corbyn Kubalek^‡, Joshua Ebbert^‡, Ryan Vance^‡, Lauren Laverty^‡, Paul Urie, and Dennis Della Corte

    J. Pathol. Inform. 20, 100540 (2025).
    
11. Modeling frameworks in nutritional epidemiology matter: comparing isotemporal and time-lagged Bayesian and frequentist approaches of carbohydrate intake and adiposity

    Sean Titensor^‡, Joshua L. Ebbert^‡, David Camacho^‡, Karen A. Della Corte, Antonio L. Palmeira, R. James Stubbs, … and Dennis Della Corte (2 other authors)

    Front. Nutr. 12, 1700898 (2025).
    
12. ChronoSort: Revealing Hidden Dynamics in AlphaFold3 Structure Predictions

    Matthew J. Argyle^‡, William P. Heaps^‡, Corbyn Kubalek^‡, Spencer S. Gardiner^‡, Bradley C. Bundy, and Dennis Della Corte

    SynBio 3 (4), 18 (2025).
    
13. Resolution of physics and deep learning-based protein engineering filters: A case study with a lipase for industrial substrate hydrolysis

    Spencer Gardiner^‡, Peter Dollinger, Filip Kovacic, Jörg Pietruszka, Daniel H. Ess, Karl-Erich Jaeger, Gunnar F. Schröder, and Dennis Della Corte

    PLoS One 20, 1-21 (2025).
    
14. Estimating area under the curve from graph-derived summary data: a systematic comparison of standard and Monte Carlo approaches

    Sean Titensor^‡, Joshua Ebbert^‡, Karen Della Corte, and Dennis Della Corte

    BMC Med. Educ. 25 (1), 197 (2025).
    
15. Enhancing AI literacy in undergraduate pre-medical education through student associations: an educational intervention

    Spencer Hopson^‡, Carson Mildon^‡, Kyle Hassard^‡, Corbyn Kubalek^‡, Lauren Laverty^‡, Paul Urie, and Dennis Della Corte

    BMC Bioinformatics 25 (1), 999 (2025).
    
16. TrIP2: Expanding the Transformer Interatomic Potential Demonstrates Architectural Scalability for Organic Compounds

    Joshua Ebbert^‡, Bryce Hedelius^†, Jyothish Joy, Daniel H. Ess, and Dennis Della Corte

    J. Phys. Chem. A 129 (21), 4757-4766 (2025).
    
17. Dietary Sugar Intake and Incident Type 2 Diabetes Risk: A Systematic Review and Dose-Response Meta-Analysis of Prospective Cohort Studies

    Karen A. Della Corte, Tyler Bosler^†, Cole McClure^‡, Anette E. Buyken, James D. LeCheminant, Lukas Schwingshackl, and Dennis Della Corte

    Adv. Nutr. 16 (5), 100413 (2025).
    
18. Conformation-specific Design: a New Benchmark and Algorithm with Application to Engineer a Constitutively Active Map Kinase

    Jacob A. Stern^†, Siba Alharbi, Anandsukeerthi Sandholu, Stefan T. Arold, and Dennis Della Corte

    bioRxiv, (2025).
    
19. Association and substitution analyses of dietary sugars, starch and fiber for indices of body fat and cardiometabolic risk– a NoHoW sub-study

    Karen A. Della Corte, Dennis Della Corte, David Camacho^‡, Graham Horgan, Antonio L. Palmeira, James Stubbs, and Berit L. Heitmann

    Eur. J. Nutr. 64 (2), 68 (2025).
    

^‡Undergraduate Student Author

^†Graduate Student Author