Department Publications

2020s

2024

9. Quantitative and Kinetic Proteomics Reveal ApoE Isoform-dependent Proteostasis Adaptations in Mouse Brain

   Nathan R. Zuniga^†, Noah E. Earls^‡, Ariel E. A. Denos^‡, Jared M. Elison^‡, Benjamin S. Jones^‡, Ethan G. Smith^‡, Noah G. Moran^‡, … Gerome M. Romero^†, Chad D. Hyer^‡, Kimberly B. Wagstaff^‡, … Mark K. Transtrum, … (3 other authors)

   PLoS Comput. Biol. 12 (20), 1-29 (2024).
   
10. Impact of submicron Nb₃Sn stoichiometric surface defects on high-field superconducting radiofrequency cavity performance

    Sarah A. Willson, Aiden V. Harbick^†, Liana Shpani, Van Do, Helena Lew-Kiedrowska, Matthias U. Liepe, Mark K. Transtrum, and S. J. Sibener

    Phys. Rev. Res. 6 (4), 043133 (2024).
    
11. Maximum entropy temperature selection via the equipartition theorem

    Jacob R. Nuttall^‡, Tracianne B. Neilsen, and Mark K. Transtrum

    185th Meeting of the Acoustical Society of America, (Sydney, Australia, December 2023). Proc. Meet. Acoust. 52 (1), 070004 (2024).
    
12. Information Geometry in Underwater Acoustics: Tutorial, Case Study, and Outlook

    Jay C. Spendlove^†, Michael C. Mortenson^†, Tracianne B. Neilsen, and Mark K. Transtrum

    J. Theor. Comput. Acoust. 32 (3), 2450011 (2024).
    
13. Learning Seabed Properties and Sensitivities from Ship Noise Spectrograms

    Michael C. Mortenson^†, Tracianne B. Neilsen, Mark K. Transtrum, and David P. Knobles

    OCEANS 2024 (Singapore, April 2024).
    
14. Toward a dynamic national transportation noise map: Modeling temporal variability of spectral traffic noise emission levels

    Mylan R. Cook^†, Kent L. Gee, Mark. K. Transtrum, and Shane V. Lympany

    J. Acoust. Soc. Am. 156 (3), 1693-1706 (2024).
    
15. Information geometry analysis example for absolute and relative transmission loss in a shallow ocean

    Jay C. Spendlove^†, Tracianne B. Neilsen, and Mark K. Transtrum

    JASA Express Letters 4 (7), 076001 (2024).
    
16. The training process of many deep networks explores the same low-dimensional manifold

    Jialin Mao, Itay Griniasty, Han Kheng Teoh, Rahul Ramesh, Rubing Yang, Mark K. Transtrum, James P. Sethna, and Pratik Chaudhari

    Proc. Natl. Acad. Sci. U. S. A. 121 (12), e2310002121 (2024).
    
17. Data-driven decomposition of crowd noise from indoor sporting events

    Mitchell C. Cutler^‡, Mylan R. Cook^†, Mark K. Transtrum, and Kent L. Gee

    J. Acoust. Soc. Am. 155 (2), 962-970 (2024).
    

^‡Undergraduate Student Author

^†Graduate Student Author