2023
- Anderson, Christian N, “Stability, Longevity, and Regulatory Bionetworks,” Advisor: Mark Transtrum (PhD Dissertation, Dec 2023).
- Nuttall, Jacob, “Maximum Entropy Approach to Bayesian Inference of Geoacoustic and Source Parameters Using Sound From Transiting Ships,” Advisor: Mark Transtrum (Senior Thesis, Aug 2023).
2022
- Beus, Ty Spencer, “Quantum Decoherence in Time-Dependent Anharmonic Systems,” Advisor: Mark Transtrum (PhD Dissertation, Jun 2022).
- Ehlert, Joey, “Efficacy of Enforced Parsimony on a Machine Learning Model of Gravity,” Advisor: Mark Transtrum (Senior Thesis, Apr 2022).
- Greenwell, Sam, “Analyzing Frequency Spectra of Crowd Speech,” Advisor: Mark Transtrum (Capstone, Apr 2022).
- Hatch, Camdon, “Investigation into Electrical Properties of 50 Micron Spiral Filaments,” Advisor: Mark Transtrum (Capstone, Aug 2022).
2021
- Gifford, Kennedy, “Transcriptome Response of Streptococcus Pneumoniae Meta-Analysis,” Advisor: Mark Transtrum (Capstone, Apr 2021).
- Jones, Braedon, “Modeling defects in Nb3Sn Superconductor Resonance Cavities with Ginzburg-Landau Theory,” Advisor: Mark Transtrum (Senior Thesis, Apr 2021).
- Kurniawan, Yonatan, “Bayesian, Frequentist, and Information Geometry Approaches to Parametric Uncertainty Quantification of Classical Empirical Interatomic Potentials,” Advisor: Mark Transtrum (Masters Thesis, Dec 2021).
- Manner, Eric, “Involving Time Delays in Gradient-Based Optimization Methods,” Advisor: Mark Transtrum (Senior Thesis, Apr 2021).
- Pedersen, Katrina Lynn, “[Title],” Advisor: Mark Transtrum (PhD Dissertation, Aug 2021).
- Rasband, Joshua, “Two Reduced Models of Nerve Behavior,” Advisor: Mark Transtrum (Senior Thesis, Apr 2021).
- Treter, Jonathan, “Sloppy Model Analysis of Buchholtz Neuron Model,” Advisor: Mark Transtrum (Senior Thesis, Jun 2021).
- Williams, Kinamo, “Asymptotic and Bayesian Approaches to Uncertainty Quantification of Interatomic Models,” Advisor: Mark Transtrum (Senior Thesis, Apr 2021).
2020
- Francis, Benjamin Lane, “Information Geometry and Model Reduction in Oscillatory and Networked Systems,” Advisor: Mark Transtrum (PhD Dissertation, Jun 2020).
- Pack, Alden Roy, “Superconductivity at its Limit: Simulating Superconductor Dynamics Near the Superconducting Superheating Field in Eilenberger and Ginzburg-Landau Theory,” Advisor: Mark Transtrum (PhD Dissertation, Apr 2020).
2019
- Carlson, Jared, “Simulations of Magnetic Vortex Nucleation at Grain Boundaries in RF Superconducting Cavities,” Advisor: Mark Transtrum (Senior Thesis, May 2019).
2018
- Bahr, Tyler, “Parameter Reduction of the Hodgkin-Huxley Model of Action Potential Propagation,” Advisor: Mark Transtrum (Senior Thesis, Apr 2018).
- Pedersen, Katrina Lynn, “Using Machine Learning to Accurately Predict Ambient Soundscapes from Limited Data Sets,” Advisor: Mark Transtrum (Masters Thesis, Dec 2018).
2017
- Barfuss, Kolten, “Algorithms for Inferring the Information Topology of Statistical Mechanics Models,” Advisor: Mark Transtrum (Senior Thesis, Apr 2017).
- Pack, Alden Roy, “Computational exploration of vortex nucleation in type II superconductors using a finite element method in Ginzburg-Landau theory,” Advisor: Mark Transtrum (Masters Thesis, Dec 2017).
2016
- Asp, Merrill, “Adaptation in Enzyme Networks: Searching for Minimal Mechanisms,” Advisor: Mark Transtrum (Senior Thesis, Apr 2016).
- Zarian, Michael, “Improving the Efficiency of the Levenberg-Marquardt Algorithm Using Partial-Rank Jacobian Updates,” Advisor: Mark Transtrum (Senior Thesis, Apr 2016).
2015
- Pack, Alden, “Computational Models of Film and Bulk Superconductors in Time Varying Magnetic Fields,” Advisor: Mark Transtrum (Senior Thesis, Aug 2015).