Department Publications

2020s

2021

• Learning Small Molecule Energies and Interatomic Forces with an Equivariant Transformer on the ANI-1x Dataset

  Bryce Hedelius^‡, Fabian B. Fuchs, and Dennis Della Corte

  ELLIS Machine Learning for Molecule Discovery Workshop (2021).
  
• A General Algorithm for Calculating Irreducible Brillouin Zones

  Jeremy J. Jorgensen^†, John E. Christensen^‡, Tyler J. Jarvis, and Gus L. W. Hart

  Commun. Comput. Phys. 31 (2), 495-515 (2021).
  
• Understanding and correcting wavenumber error in interference pattern structured illumination imaging

  Benjamin G. Whetten^‡, Jarom S. Jackson^†, Richard L. Sandberg, and Dallin S. Durfee

  Opt. Express 30 (1), 70-80 (2021).
  
• Theoretical and computational improvements to the algebraic method for discovering cooperative rigid-unit modes

  Branton J. Campbell, Harold T. Stokes, Tyler B. Averett^‡, Shae Machlus, and Christopher J. Yost^‡

  J. Appl. Crystallogr. 54 (6), 1664-1675 (2021).
  
• The ISOTILT software for discovering cooperative rigid-unit rotations in networks of interconnected rigid units

  Branton J. Campbell, Harold T. Stokes, Tyler B. Averett^‡, Shae Machlus, and Christopher J. Yost^‡

  J. Appl. Crystallogr. 54 (6), 1847-1856 (2021).
  
• Seabed Classification Using a Convolutional Neural Network on Explosive Sounds

  Kira Howarth^‡, Tracianne B. Neilsen, David F. Van Komen^†, and David Paul Knobles

  IEEE J. Ocean. Eng. 47 (3), 670-679 (2021).
  
• Evaluation of Deep Neural Network ProSPr for Accurate Protein Distance Predictions on CASP14 Targets

  Jacob Stern^†, Bryce Hedelius^‡, Olivia Fisher^‡, Wendy M. Billings^‡, and Dennis Della Corte

  Int. J. Mol. Sci. 22, 12835 (2021).
  
• Uniform structural phase transition in V₂O₃ without short-range distortions of the local structure

  Ethan R. A. Fletcher^‡, Kentaro Higashi, Yoav Kalcheim, Hiroshi Kageyama, and Benjamin A. Frandsen

  Phys. Rev. B 104 (18), 184115 (2021).
  
• Experimental observation of polarization-resolved nonlinear Thomson scattering of elliptically polarized light

  Colton Fruhling, Junzhi Wang, Donald Umstadter, Christoph Schulzke^†, Mahonri Romero^‡, Michael Ware, and Justin Peatross

  Phys. Rev. A 104 (5), 053519 (2021).
  
• Investigation of the correlation patterns and the Compton dominance variability of Mrk 421 in 2017

  MAGIC Collaboration, V. A. Acciari, S. Ansoldi, L. A. Antonelli, A. Arbet Engels, M. Artero, … J. W. Moody, … M. D. Joner, M. Spencer^‡, … (277 other authors)

  Astron. Astrophys. 655, A89 (2021).
  
• Delivering Digital Transformation with Self-reporting Data Assets

  Dennis Della Corte, Naomi Young^‡, and Karen A. Della Corte

  Proceedings of the Future Technologies Conference (FTC) 2021, Volume 1. FTC 2021. Lecture Notes in Networks and Systems, vol 358. Springer, Cham.
  
• An Examination of Pulsational Changes in the Classical Cepheid X Cygni

  Eric G. Hintz, Tyler B. Harding^‡, and Maureen L. Hintz

  Astron. J. 162 (4), 149 (2021).
  
• Peak directivity analysis of far-field acoustical measurements during three GEM 63 static firings

  Michael S. Bassett^‡, Kent L. Gee, Grant W. Hart, Logan T. Mathews^‡, Reese D. Rasband^†, and Daniel J. Novakovich^‡

  Proc. Meet. Acoust. 39, 040004 (2021).
  
• Understanding and compensating for noise on IBM quantum computers

  Scott Johnstun^‡ and Jean-François Van Huele

  Am. J. Phys. 89 (10), 935-942 (2021).
  
• Modeling SARS-CoV2 proteins in the CASP-commons experiment

  Andriy Kryshtafovych, John Moult, Wendy M. Billings^‡, Dennis Della Corte, Krzysztof Fidelis, Sohee Kwon, … (4 other authors)

  Proteins: Struct., Funct., Bioinf., (2021).
  
• Annealing of Polymer-Encased Nanorods on DNA Origami Forming Metal–Semiconductor Nanowires: Implications for Nanoelectronics

  Basu R. Aryal^†, Dulashani R. Ranasinghe^†, Chao Pang^†, Asami E. F. Ehlert^‡, Tyler R. Westover^†, John N. Harb, Robert C. Davis, and Adam T. Woolley

  ACS Appl. Nano Mater. 4 (9), 9094-9103 (2021).
  
• High-amplitude time reversal focusing of airborne ultrasound to generate a focused nonlinear difference frequency

  Carla B. Wallace^‡ and Brian E. Anderson

  J. Acoust. Soc. Am. 150 (2), 1411-1423 (2021).
  
• Preferred locations in a laser beam for photophoretic trapping of microscopic particles

  Michael Ware, Aaron Peatross^‡, Daniel Smalley, Daniel Tveten^‡, and Justin Peatross

  Optical Trapping and Optical Micromanipulation XVIII, (San Diego, CA, August 2021). Proc. SPIE 11798, 1179826 (2021).
  
• Experimental sound power from curved plates using the radiation resistance matrix and a scanning vibrometer

  Trent Bates^†, Ian C. Bacon^‡, Caleb B. Goates^†, and Scott D. Sommerfeldt

  INTER-NOISE and NOISE-CON Congress and Conference Proceedings, InterNoise21, (Washington DC, August 2021), pp. 2812-2821.
  
• Characterization of Falcon 9 launch vehicle noise from far-field measurements

  Logan T. Mathews^‡, Kent L. Gee, and Grant W. Hart

  J. Acoust. Soc. Am. 150 (1), 620-633 (2021).
  
• The performance of time reversal in elastic chaotic cavities as a function of volume and geometric shape of the cavity

  Paige E. Simpson^‡ and Brian E. Anderson

  J. Acoust. Soc. Am. 150 (1), 526-539 (2021).
  
• Discovery of a young low-mass brown dwarf transiting a fast-rotating F-type star by the Galactic Plane eXoplanet (GPX) survey

  P Benni, A Y Burdanov, V V Krushinsky, A Bonfanti, G Hébrard, J M Almenara, … M D Joner, M Spencer^‡, … (59 other authors)

  Mon. Not. Roy. Astron. Soc. 505 (4), 4956-4967 (2021).
  
• Superparamagnetic dynamics and blocking transition in Fe₃O₄ nanoparticles probed by vibrating sample magnetometry and muon spin relaxation

  Benjamin A. Frandsen, Charlotte Read^‡, Jade Stevens^‡, Colby Walker^‡, Mason Christiansen^‡, Roger G. Harrison, and Karine Chesnel

  Phys. Rev. Materials 5 (5), 054411 (2021).
  
• Active noise control using remotely placed sources: Application to magnetic resonance imaging noise and equivalence to the time reversal inverse filter

  Trent S. Furlong^‡, Brian E. Anderson, Brian D. Patchett^†, and Scott D. Sommerfeldt

  Appl. Acoust. 176 (176), 107902 (2021).
  
• Obtaining far-field spherical directivities of guitar amplifiers from arbitrarily shaped arrays using the Helmholtz equation least-squares method

  Samuel David Bellows^‡ and Timothy W. Leishman

  179th Meeting of the Acoustical Society of America, Acoustics Virtually Everywhere, (December 2020). Proc. Meet. Acoust. 42 (1), 055005 (2021).
  
• Ab initio modeling and experimental investigation of Fe₂P by DFT and spin spectroscopies

  Pietro Bonfà, Muhammad Maikudi Isah, Benjamin A. Frandsen, Ethan J. Gibson^‡, Ekkes Brück, Ifeanyi John Onuorah, Roberto De Renzi, and Giuseppe Allodi

  Phys. Rev. Materials 5 (4), 044411 (2021).
  
• The whole is greater than its parts: ensembling improves protein contact prediction

  Wendy M. Billings^‡, Connor J. Morris^‡, and Dennis Della Corte

  Sci. Rep. 11 (1), 8039 (2021).
  
• Coming of age of allotrope: proceedings from the Fall 2020 Allotrope Connect

  Todd Millecam^‡, Austin J. Jarrett^‡, Naomi Young^‡, Dana E. Vanderwall, and Dennis Della Corte

  Drug Discov. Today 26 (8), 1922-1928 (2021).
  
• Experimental confirmation of electron figure-8 motion in a strong laser field

  Brittni Pratt^†, Nicholas Atkinson^‡, Daniel Hodge^‡, Mahonri Romero^‡, Christoph Schulzke^†, Yance Sun^‡, Michael Ware, and Justin Peatross

  Phys. Rev. A 103 (3), L031102 (2021).
  
• Characterizing the effects of two ground-based outdoor microphone configurations

  Mark C. Anderson^‡, James H. Stephenson, Nikolas S. Zawodny, and Kent L. Gee

  178th Meeting of the Acoustical Society of America, (San Diego, CA, December 2019). Proc. Meet. Acoust. 39 (1), 055011 (2021).
  
• High-resolution spherical directivity of live speech from a multiple-capture transfer function method

  Timothy W. Leishman, Samuel D. Bellows^†, Claire M. Pincock^‡, and Jennifer K. Whiting^†

  J. Acoust. Soc. Am. 149 (3), 1507-1523 (2021).
  
• Seabed type and source parameters predictions using ship spectrograms in convolutional neural networks

  David F. Van Komen^†, Tracianne B. Neilsen, Daniel B. Mortenson^‡, Mason C. Acree^‡, David P. Knobles, Mohsen Badiey, and William S. Hodgkiss

  J. Acoust. Soc. Am. 149 (2), 1198-1210 (2021).
  
• Neutron scattering investigation of proposed Kosterlitz-Thouless transitions in the triangular-lattice Ising antiferromagnet TmMgGaO₄

  Zhiling Dun, Marcus Daum, Raju Baral^‡, Henry E. Fischer, Huibo Cao, Yaohua Liu, … and Benjamin A. Frandsen (6 other authors)

  Phys. Rev. B 103 (6), 064424 (2021).
  
• Using molecular docking and molecular dynamics to investigate protein-ligand interactions

  Connor J. Morris^‡ and Dennis Della Corte

  Mod. Phys. Lett. B 35 (8), 2130002 (2021).
  
• Current computational methods for enzyme design

  Talmage L. Coates^‡, Naomi Young^‡, Austin J. Jarrett^‡, Connor J. Morris^‡, James D. Moody, and Dennis Della Corte

  Mod. Phys. Lett. B 35 (9), 2150155 (2021).
  
• Space Telescope and Optical Reverberation Mapping Project. IX. Velocity–Delay Maps for Broad Emission Lines in NGC 5548

  Keith Horne, G. De Rosa, B. M. Peterson, A. J. Barth, J. Ely, M. M. Fausnaugh, … M. D. Joner, … M. Spencer^‡, … (147 other authors)

  Astrophys. J. 907 (2), (2021).
  
• Robustness of the remanent magnetic domain pattern formation and associated stripe-bubble transitions in Co/Pt multilayers against field sequencing

  Aaron Gentillon^‡, Carson Richards^‡, Luis A. Ortiz-Flores^‡, Jeremy Metzner^‡, David Montealegre^‡, Matthew Healey^‡, Kelsey Cardon^‡, Andrew Westover^‡, … and Karine Chesnel (1 other authors)

  AIP Advances 11 (1), 015339 (2021).
  
• Jet Noise Measurements of an Installed GE F404 Engine

  Kevin M. Leete^†, Aaron B. Vaughn^†, Michael S. Bassett^‡, Reese D. Rasband^‡, Daniel J. Novakovich^‡, Kent L. Gee, … (3 other authors)

  AIAA Scitech 2021 Forum, (online, January 2021).
  
• Source Localization of Crackle-Related Events in Military Aircraft Jet Noise

  Aaron B. Vaughn^†, Kent L. Gee, S. Hales Swift^‡, Kevin M. Leete^‡, Alan T. Wall, J. Micah Downing, and Michael M. James

  AIAA J. 59 (6), 2251-2261 (2021).
  
• A Proposal for a Universal Three-Qubit Logic Gate for Quantum Computation: A Deutsch Gate from Two Quantum Dots and a Flying Photon

  Paul W. Bailey^‡ and Jean-Francois S. Van Huele

  J. Utah Acad. Sci. 97, 347-357 (2021).
  
• Robustness of a Quantum Algorithm in the Presence of Noise

  Scott Johnstun^‡ and Jean-François Van Huele

  J. Utah Acad. Sci. 97, 329-345 (2021).
  
• Continuous Trajectories for the Quantum Harmonic Oscillator

  Matthew Lawyer^‡ and Jean-François Van Huele

  J. Utah Acad. Sci. 97, 301-315 (2021).
  

^‡Undergraduate Student Author

^†Graduate Student Author